Tag Archives: Biomolecules

Venus, Phosphine and the Possibility of Life [EPA]

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http://arxiv.org/abs/2301.05160


The search for life elsewhere in the universe is one of the central aims of science in the 21st century. While most of this work is aimed at planets orbiting other stars, the search for life in our own Solar System is an important part of this endeavour. Venus is often thought to have too harsh an environment for life, but it may have been a more hospitable place in the distant past. If life evolved there in the past then the cloud decks of Venus are the only remaining niche where life as we know it might survive today. The discovery of the molecule phosphine, PH$_3$, in these clouds has reinvigorated research looking into the possibility of life in the clouds. In this review we examine the background to studies of the possibility of life on Venus, discuss the discovery of phosphine, review conflicting and confirming observations and analyses, and then look forward to future observations and space missions that will hopefully provide definitive answers as to the origin of phosphine on Venus and to the question of whether life might exist there.

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D. Clements
Fri, 13 Jan 23
7/72

Comments: Invited review, accepted for publication in Contemporary Physics

Biological Homochirality and the Search for Extraterrestrial Biosignatures [EPA]

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http://arxiv.org/abs/2205.01193


Most amino acids and sugars molecules occur in mirror, or chiral, images of each other, knowns as enantiomers. However, life on Earth is mostly homochiral: proteins contain almost exclusively L-amino acids, while only D-sugars appear in RNA and DNA. The mechanism behind this fundamental asymmetry of life remains unknown, despite much progress in the theoretical and experimental understanding of homochirality in the past decades. We review three potential mechanisms for the emergence of biological homochirality on primal Earth and explore their implications for astrobiology: the first, that biological homochirality is a stochastic process driven by local environmental fluctuations; the second, that it is driven by circularly-polarized ultraviolet radiation in star-forming regions; and the third, that it is driven by parity violation at the elementary particle level. We argue that each of these mechanisms leads to different observational consequences for the existence of enantiomeric excesses in our solar system and in exoplanets, pointing to the possibility that the search for life elsewhere will help elucidate the origins of homochirality on Earth.

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M. Gleiser
Wed, 4 May 22
23/48

Comments: arXiv admin note: text overlap with arXiv:0802.1446

Biosignatures of the Earth I. Airborne spectropolarimetric detection of photosynthetic life [EPA]

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http://arxiv.org/abs/2106.00493


Context. Homochirality is a generic and unique property of life on Earth and is considered a universal and agnostic biosignature. Homochirality induces fractional circular polarization in the incident light that it reflects. Because this circularly polarized light can be sensed remotely, it can be one of the most compelling candidate biosignatures in life detection missions. While there are also other sources of circular polarization, these result in spectrally flat signals with lower magnitude. Additionally, circular polarization can be a valuable tool in Earth remote sensing because the circular polarization signal directly relates to vegetation physiology. Aims. While high-quality circular polarization measurements can be obtained in the laboratory and under semi-static conditions in the field, there has been a significant gap to more realistic remote sensing conditions. Methods. In this study, we present sensitive circular spectropolarimetric measurements of various landscape elements taken from a fast-moving helicopter. Results. We demonstrate that during flight, within mere seconds of measurements, we can differentiate (S/N>5) between grass fields, forests, and abiotic urban areas. Importantly, we show that with only nonzero circular polarization as a discriminant, photosynthetic organisms can even be measured in lakes. Conclusions. Circular spectropolarimetry can be a powerful technique to detect life beyond Earth, and we emphasize the potential of utilizing circular spectropolarimetry as a remote sensing tool to characterize and monitor in detail the vegetation physiology and terrain features of Earth itself.

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C. Patty, J. Kühn, P. Lambrev, et. al.
Wed, 2 Jun 21
36/48

Comments: 7 pages, 6 figures

Super-Earths, M Dwarfs, and Photosynthetic Organisms: Habitability in the Lab [EPA]

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http://arxiv.org/abs/2101.04448


In a few years, space telescopes will investigate our Galaxy to detect evidence of life, mainly by observing rocky planets. In the last decade, the observation of exoplanet atmospheres and the theoretical works on biosignature gasses have experienced a considerable acceleration. The~most attractive feature of the realm of exoplanets is that 40\% of M dwarfs host super-Earths with a minimum mass between 1 and 30 Earth masses, orbital periods shorter than 50 days, and radii between those of the Earth and Neptune (1–3.8 R$_\oplus$). Moreover, the recent finding of cyanobacteria able to use far-red (FR) light for oxygenic photosynthesis due to the synthesis of chlorophylls $d$ and $f$, extending in vivo light absorption up to 750\ nm, suggests the possibility of exotic photosynthesis in planets around M dwarfs. Using innovative laboratory instrumentation, we exposed different cyanobacteria to an M dwarf star simulated irradiation, comparing their responses to those under solar and FR simulated lights.~As expected, in FR light, only the cyanobacteria able to synthesize chlorophyll $d$ and $f$ could grow. Surprisingly, all strains, both able or unable to use FR light, grew and photosynthesized under the M dwarf generated spectrum in a similar way to the solar light and much more efficiently than under the FR one. Our findings highlight the importance of simulating both the visible and FR light components of an M dwarf spectrum to correctly evaluate the photosynthetic performances of oxygenic organisms exposed under such an exotic light~condition.

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R. Claudi, E. Alei, M. Battistuzzi, et. al.
Wed, 13 Jan 21
12/70

Comments: 19 pages, 5 Figures. Published on Life,2021, 11, 10

Emergence of life in an inflationary universe [CL]

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http://arxiv.org/abs/1911.08092


Abiotic emergence of ordered information stored in the form of RNA is an important unresolved problem concerning the origin of life. A polymer longer than 40–100 nucleotides is necessary to expect a self-replicating activity, but the formation of such a long polymer having a correct nucleotide sequence by random reactions seems statistically unlikely. However, our universe, created by a single inflation event, likely includes more than $10^{100}$ Sun-like stars. If life can emerge at least once in such a large volume, it is not in contradiction with our observations of life on Earth, even if the expected number of abiogenesis events is negligibly small within the observable universe that contains only $10^{22}$ stars. Here, a quantitative relation is derived between the minimum RNA length $l_{\min}$ required to be the first biological polymer, and the universe size necessary to expect the formation of such a long and active RNA by randomly adding monomers. It is then shown that an active RNA can indeed be produced somewhere in an inflationary universe. On the other hand, $l_{\min}$ must be shorter than $\sim$20 nucleotides for the abiogenesis probability close to unity on a terrestrial planet, but a self-replicating activity is not expected for such a short RNA. Therefore, if extraterrestrial organisms of a different origin from those on Earth are discovered in the future, it would imply an unknown mechanism at work to polymerize nucleotides much faster than random statistical processes.

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T. Totani
Wed, 20 Nov 19
32/73

Comments: 11 pages, 1 figure

Circular spectropolarimetric sensing of vegetation in the field; possibilities for the remote detection of extraterrestrial life [EPA]

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http://arxiv.org/abs/1902.05859


Homochirality is a generic and unique property of all biochemical life and the fractional circular polarization it induces therefore constitutes an unambiguous biosignature. However, while high-quality circular polarimetric spectra can be easily and quickly obtained in the laboratory, accurate measurements in the field are much more challenging due to large changes in illumination and target movement. In this study we have measured various targets in the field, up to distances of a few kilometers, using the dedicated circular spectropolarimeter TreePol. We show how photosynthetic life can readily be distinguished from abiotic matter. We underline the potential of circular polarization signals as a remotely accessible means to characterize terrestrial life and detecting the presence of extraterrestrial life.

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C. Patty, I. Kate, W. Buma, et. al.
Mon, 18 Feb 19
6/37

Comments: 24 pages, 6 figures

Circular spectropolarimetric sensing of chiral photosystems in decaying leaves [CL]

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http://arxiv.org/abs/1701.01297


Circular polarization spectroscopy has proven to be an indispensable tool in photosynthesis research and (bio)-molecular research in general. Oxygenic photosystems typically display an asymmetric Cotton effect around the chlorophyll absorbance maximum with a signal $\leq 1 \%$. In vegetation, these signals are the direct result of the chirality of the supramolecular aggregates. The circular polarization is thus directly influenced by the composition and architecture of the photosynthetic macrodomains, and is thereby linked to photosynthetic functioning. Although ordinarily measured only on a molecular level, we have developed a new spectropolarimetric instrument, TreePol, that allows for both laboratory and in-the-field measurements. Through spectral multiplexing, TreePol is capable of fast measurements with a sensitivity of $\sim 1*10^{-4}$ and is therefore suitable of non-destructively probing the molecular architecture of whole plant leaves. We have measured the chiroptical evolution of \textit{Hedera helix} leaves for a period of 22 days. Spectrally resolved circular polarization measurements (450-900 nm) on whole leaves in transmission exhibit a strong decrease in the polarization signal over time after plucking, which we accredit to the deterioration of chiral macro-aggregates. Chlorophyll \textit{a} levels measured over the same period by means of UV-Vis absorption and fluorescence spectroscopy showed a much smaller decrease. With these results we are able to distinguish healthy from deteriorating leaves. Hereby we indicate the potency of circular polarization spectroscopy on whole and intact leaves as a nondestructive tool for structural and plant stress assessment. Additionally, we underline the establishment of circular polarization signals as remotely accessible means of detecting the presence of extraterrestrial life.

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C. Patty, L. Visser, F. Ariese, et. al.
Fri, 6 Jan 17
5/46

Comments: 29 pages, 6 figures

Enantiomer-specific isotope analysis of D- and L-alanine: Nitrogen isotopic hetero- and homogeneity in microbial and chemical processes

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Nitrogen isotopic hetero- and homogeneity of D-{\alpha}-alanine and L-{\alpha}-alanine were investigated in microbial processes in the domain Bacteria and in chemical processes in symmetric organic synthesis. D-alanine is an enantiomer that is physiologically essential for microbial growth and metabolic maintenance. The nitrogen isotopic difference {\Delta}15ND-L (defined as {\delta}15ND-Ala – {\delta}15NL-Ala) in peptidoglycan amino acids in bacteria such as the representative gram-positive phyla Firmicutes and Actinobacteria (Enterococcus faecalis, Staphylococcus aureus, Staphylococcus staphylolyticus, Lactobacillus acidophilus, Bacillus subtilis, Micrococcus luteus, and Streptomyces sp.) tended to be 15N-depleted in D-alanine ({\Delta}15ND-L < -2.0 permil). These results suggest that the composition of isotopically heterogeneous components in these bacteria is primarily controlled by enzymatic pathways prior to formation of the bacterial cell wall. In contrast, the {\Delta}15ND-L of racemic alanine in the chemical pathway during the nucleophilic substitution reaction (SN1 type) between 2-bromopropionic acid and ammonia identified fully homogeneous components for each enantiomer. The novel enantiomer-specific isotopic analysis (ESIA) method is useful in determining the origins of chirality in biogenic and abiogenic processes and is applicable to enantiomer studies.
— Keywords: D-alanine, microbial process, chemical process, nitrogen isotopic composition, enantiomer-specific isotope analysis (ESIA)

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Date added: Tue, 8 Oct 13